STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB30462.1Putative DHD superfamily phosphohydrolase. (423 aa)    
Predicted Functional Partners:
AGB30464.1
PFAM: Universal stress protein family.
 
     0.870
AGB30463.1
PFAM: Universal stress protein family.
       0.843
AGB32813.1
Methyltransferase family protein; PFAM: Methyltransferase domain.
  
     0.747
AGB30323.1
SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase; PFAM: TRAM domain.
  
     0.717
AGB31980.1
PFAM: Membrane protein of unknown function DUF63.
  
     0.706
fau-1
Protein of unknown function (DUF402); Probable RNase involved in rRNA stability through maturation and/or degradation of precursor rRNAs. Binds to RNA in loop regions with AU-rich sequences.
  
     0.703
AGB33534.1
DNA helicase, Rad3; PFAM: DEAD_2.
  
     0.703
AGB30333.1
DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase.
  
     0.684
AGB33113.1
PFAM: Acetyltransferase (GNAT) family.
  
     0.665
AGB31157.1
Hypothetical protein; PFAM: MTH865-like family.
  
     0.664
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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