STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB30468.1PFAM: Putative transposase DNA-binding domain; TIGRFAM: transposase, IS605 OrfB family, central region. (413 aa)    
Predicted Functional Partners:
AGB30469.1
Hypothetical protein.
       0.575
AGB31811.1
Putative transcriptional regulator.
  
     0.529
AGB31281.1
PFAM: DNA methylase.
  
     0.500
AGB29975.1
Putative nucleic acid-binding protein, contains PIN domain; PFAM: PIN domain.
  
     0.488
AGB32437.1
Hypothetical protein.
  
     0.485
AGB31191.1
Hypothetical protein.
  
     0.470
AGB32498.1
Hypothetical protein.
  
     0.457
AGB32281.1
PFAM: HTH DNA binding domain.
  
     0.453
AGB29965.1
Signal transduction histidine kinase; PFAM: GAF domain; PAS fold.
  
     0.452
AGB30873.1
CARDB domain-containing protein; PFAM: CARDB.
  
     0.434
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.