STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB30471.1Metal-dependent hydrolase, beta-lactamase superfamily I. (274 aa)    
Predicted Functional Partners:
AGB30470.1
Hypothetical protein.
       0.894
AGB30467.1
PFAM: ATPase family associated with various cellular activities (AAA); Belongs to the AAA ATPase family.
 
     0.748
rnz
Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
     
 0.532
AGB31048.1
Flavin-dependent dehydrogenase; PFAM: FAD binding domain.
   
  
 0.472
phnC
ABC-type phosphate/phosphonate transport system, ATPase component; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
  
  
 0.447
AGB31475.1
PFAM: Uncharacterized protein conserved in archaea (DUF2150).
  
     0.444
AGB32270.1
PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain.
 
  
 0.431
AGB31051.1
Putative acyltransferase; PFAM: Protein of unknown function, DUF583.
  
     0.430
AGB31581.1
ABC-type phosphate/phosphonate transport system, periplasmic component; TIGRFAM: phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein.
  
  
 0.416
AGB31109.1
PFAM: Protein of unknown function (DUF555); Belongs to the UPF0212 family.
  
     0.411
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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