STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB30484.1PFAM: FAD binding domain; TIGRFAM: geranylgeranyl reductase family. (363 aa)    
Predicted Functional Partners:
ubiA
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.
 
  
 0.764
AGB32072.1
Flavin-dependent dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase.
  
   
 0.745
AGB30571.1
Flavin-dependent dehydrogenase; PFAM: Lycopene cyclase protein; TIGRFAM: geranylgeranyl reductase family.
  
   
 0.743
AGB31048.1
Flavin-dependent dehydrogenase; PFAM: FAD binding domain.
  
 
 0.726
AGB32517.1
PFAM: CobN/Magnesium Chelatase; TIGRFAM: cobaltochelatase, CobN subunit.
 
  
 0.600
AGB32518.1
PFAM: Magnesium chelatase, subunit ChlI; von Willebrand factor type A domain.
  
  
 0.573
AGB31050.1
Electron transfer flavoprotein, beta subunit; PFAM: Electron transfer flavoprotein domain.
 
 
 0.567
AGB30485.1
PFAM: MatE; TIGRFAM: putative efflux protein, MATE family.
  
    0.558
AGB30056.1
PFAM: Putative RNA methylase family UPF0020; TIGRFAM: TIGR01177 family protein.
 
    0.534
AGB30988.1
Phytoene/squalene synthetase; PFAM: Squalene/phytoene synthase.
 
  
 0.508
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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