Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
AGB30489.1PFAM: HTH DNA binding domain. (219 aa)    
Predicted Functional Partners:
AGB32198.1
PFAM: HTH DNA binding domain.
  
     0.704
AGB30650.1
PFAM: HTH DNA binding domain.
  
     0.678
AGB33186.1
Hypothetical protein.
  
     0.661
AGB30595.1
PFAM: HTH DNA binding domain.
  
     0.593
AGB32437.1
Hypothetical protein.
  
     0.590
AGB32963.1
PFAM: HTH DNA binding domain.
  
     0.584
AGB31257.1
Site-specific recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain.
  
     0.580
AGB33113.1
PFAM: Acetyltransferase (GNAT) family.
  
     0.574
phhB
PFAM: Pterin 4 alpha carbinolamine dehydratase.
       0.568
AGB30491.1
Hypothetical protein.
       0.568
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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