STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
AGB30498.1Putative phosphatase. (211 aa)    
Predicted Functional Partners:
AGB31943.1
PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.
  
  
 
0.913
AGB30927.1
HAD-superfamily hydrolase, subfamily IIB; Catalyzes the dephosphorylation of 2-phosphoglycolate.
    
 0.906
phhB
PFAM: Pterin 4 alpha carbinolamine dehydratase.
  
    0.753
AGB30323.1
SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase; PFAM: TRAM domain.
  
     0.641
AGB30333.1
DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase.
 
 
 
 0.637
AGB30462.1
Putative DHD superfamily phosphohydrolase.
  
     0.619
AGB32813.1
Methyltransferase family protein; PFAM: Methyltransferase domain.
  
     0.619
AGB33157.1
Putative Fe-S oxidoreductase; PFAM: Uncharacterised protein family (UPF0153).
 
     0.607
AGB33534.1
DNA helicase, Rad3; PFAM: DEAD_2.
 
   
 0.599
AGB31940.1
Acetyltransferase, N-acetylglutamate synthase; PFAM: Acetyltransferase (GNAT) family.
  
     0.572
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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