STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
AGB30503.1Transcriptional regulator. (360 aa)    
Predicted Functional Partners:
AGB32350.1
PFAM: Radical SAM superfamily; TIGRFAM: putative heme d1 biosynthesis radical SAM protein NirJ1; radical SAM additional 4Fe4S-binding domain.
 
 
 0.979
AGB32270.1
PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain.
 
 
 0.978
AGB30502.1
TIGRFAM: siroheme synthase, N-terminal domain.
 
   
 0.921
AGB33305.1
Hypothetical protein.
 
  
 
0.913
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
     
 0.806
AGB31857.1
PFAM: Cytochrome D1 heme domain.
  
     0.710
AGB32267.1
Heme/copper-type cytochrome/quinol oxidase, subunit 2; PFAM: TAT (twin-arginine translocation) pathway signal sequence; Cytochrome C oxidase subunit II, periplasmic domain; Cytochrome D1 heme domain.
  
     0.710
AGB30504.1
Hypothetical protein.
       0.657
AGB32352.1
PFAM: Radical SAM superfamily; TIGRFAM: radical SAM protein, BA_1875 family; radical SAM additional 4Fe4S-binding domain.
  
 0.631
AGB33610.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
    0.505
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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