STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB30577.1Hypothetical protein; PFAM: YqcI/YcgG family. (265 aa)    
Predicted Functional Partners:
AGB30576.1
Nicotinamidase-like amidase; PFAM: Isochorismatase family.
 
     0.937
AGB30578.1
PFAM: Uncharacterized conserved protein (COG2071).
 
     0.622
AGB30342.1
NTP pyrophosphohydrolase; PFAM: NUDIX domain.
  
     0.556
AGB32058.1
Plastocyanin; PFAM: Copper binding proteins, plastocyanin/azurin family; TIGRFAM: plastocyanin.
  
     0.545
AGB30575.1
Hypothetical protein.
       0.529
AGB32915.1
Transcriptional regulator; PFAM: AsnC family.
  
     0.517
AGB30921.1
Hypothetical protein.
  
     0.495
AGB32897.1
Putative ATPase.
  
     0.473
AGB32683.1
Phosphate uptake regulator; PFAM: PhoU domain; SpoVT / AbrB like domain.
  
     0.468
AGB32557.1
Hypothetical protein.
  
     0.456
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.