STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB30585.1Hypothetical protein; PFAM: LVIVD repeat. (465 aa)    
Predicted Functional Partners:
AGB30586.1
Thioredoxin-like protein; PFAM: NifU-like domain.
      0.838
AGB30732.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
   
 0.668
AGB32674.1
Hypothetical protein.
  
     0.598
AGB30733.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
 
   
 0.585
AGB30584.1
PFAM: Putative transposase DNA-binding domain; TIGRFAM: transposase, IS605 OrfB family, central region.
       0.581
AGB31501.1
Hypothetical protein.
  
     0.579
AGB32678.1
Hypothetical protein.
  
     0.574
AGB33327.1
ABC-type sugar transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein.
  
     0.560
AGB33074.1
Sugar kinase, ribokinase; PFAM: pfkB family carbohydrate kinase.
  
     0.557
AGB31735.1
Hypothetical protein.
  
     0.551
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.