Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB30861.1PFAM: HTH DNA binding domain. (216 aa)    
Predicted Functional Partners:
AGB31382.1
PFAM: Sugar-specific transcriptional regulator TrmB.
  
     0.663
AGB30844.1
PFAM: HTH DNA binding domain.
  
     0.637
AGB29983.1
Peroxiredoxin; PFAM: AhpC/TSA family.
  
     0.567
AGB30860.1
Geranylgeranylglyceryl phosphate synthase family protein; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids.
       0.565
AGB30650.1
PFAM: HTH DNA binding domain.
  
     0.535
AGB32085.1
Hypothetical protein.
  
     0.529
AGB31801.1
PFAM: HTH DNA binding domain.
  
     0.522
AGB33102.1
Hypothetical protein.
  
     0.511
AGB32198.1
PFAM: HTH DNA binding domain.
  
     0.507
AGB33352.1
PFAM: HTH DNA binding domain.
  
     0.495
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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