STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB30873.1CARDB domain-containing protein; PFAM: CARDB. (1422 aa)    
Predicted Functional Partners:
AGB32437.1
Hypothetical protein.
  
     0.754
AGB32830.1
Putative xylanase/chitin deacetylase; PFAM: Polysaccharide deacetylase.
  
     0.744
AGB31191.1
Hypothetical protein.
  
     0.742
AGB32498.1
Hypothetical protein.
  
     0.735
AGB32829.1
PFAM: Asparagine synthase.
  
     0.718
AGB30544.1
ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing; PFAM: UvrD/REP helicase.
  
     0.713
AGB31826.1
Hypothetical protein.
  
     0.696
AGB31257.1
Site-specific recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain.
  
     0.691
AGB31158.1
PAS domain S-box; PFAM: HTH DNA binding domain; GAF domain; PAS fold; TIGRFAM: PAS domain S-box.
  
     0.664
AGB33399.1
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: HTH DNA binding domain; Response regulator receiver domain; GAF domain.
  
     0.663
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.