STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB30885.1Putative hydrolase or acyltransferase of alpha/beta superfamily. (361 aa)    
Predicted Functional Partners:
AGB33347.1
Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein; PFAM: short chain dehydrogenase.
 
  0.540
AGB30886.1
Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily.
   
   0.508
AGB31139.1
PFAM: Calcineurin-like phosphoesterase.
   
  0.502
AGB33599.1
TIGRFAM: phosphoesterase, MJ0936 family.
   
  0.502
AGB30957.1
Putative hydrolase or acyltransferase of alpha/beta superfamily.
  
     0.497
AGB32520.1
Putative hydrolase or acyltransferase of alpha/beta superfamily.
  
     0.494
AGB30538.1
Putative hydrolase or acyltransferase of alpha/beta superfamily.
  
     0.487
AGB33566.1
Putative hydrolase or acyltransferase of alpha/beta superfamily.
  
     0.478
AGB33185.1
Putative hydrolase or acyltransferase of alpha/beta superfamily.
  
     0.471
AGB30887.1
PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isopropylmalate/isohomocitrate dehydrogenases.
     
 0.461
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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