STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB30910.1Arylsulfatase A family protein; PFAM: Sulfatase. (482 aa)    
Predicted Functional Partners:
AGB30911.1
Hypothetical protein.
       0.561
AGB33068.1
Beta-galactosidase/beta-glucuronidase; PFAM: domain; Glycosyl hydrolases family 2, sugar binding domain.
 
 
 
 0.525
AGB31532.1
Hypothetical protein; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase.
 
     0.445
rpoK
DNA-directed RNA polymerase, subunit K/omega; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit family.
  
 
 
 0.423
AGB30909.1
PFAM: NAD dependent epimerase/dehydratase family.
       0.421
AGB31199.1
Hypothetical protein; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase.
 
     0.421
AGB31381.1
Thioredoxin domain-containing protein; PFAM: Thioredoxin.
  
 
 0.411
AGB31181.1
Hypothetical protein; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase.
 
     0.409
AGB30908.1
Membrane protein involved in the export of O-antigen and teichoic acid; PFAM: Polysaccharide biosynthesis protein.
     
 0.402
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.