STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGB31022.1Helicase family protein with metal-binding cysteine cluster; PFAM: Helicase conserved C-terminal domain; Domain of unknown function (DUF1998); DEAD/DEAH box helicase. (835 aa)    
Predicted Functional Partners:
AGB31023.1
Hypothetical protein.
       0.883
AGB31334.1
Kef-type K+ transport system, membrane component; PFAM: Sodium/hydrogen exchanger family.
   
    0.848
AGB32338.1
Putative exonuclease.
 
    0.600
AGB31024.1
Thioredoxin domain-containing protein; PFAM: Thioredoxin.
       0.586
AGB32697.1
Alcohol dehydrogenase, class IV; PFAM: Iron-containing alcohol dehydrogenase.
   
    0.543
AGB32013.1
Hypothetical protein.
  
    0.524
AGB32578.1
DNA polymerase elongation subunit (family B); PFAM: DNA polymerase family B; DNA polymerase family B, exonuclease domain; TIGRFAM: intein N-terminal splicing region; intein C-terminal splicing region.
    
 
 0.505
AGB31849.1
Hypothetical protein.
   
    0.458
AGB32784.1
Putative membrane protein; PFAM: Transmembrane exosortase (Exosortase_EpsH); TIGRFAM: exosortase/archaeosortase family protein; archaeosortase A, PGF-CTERM-specific.
   
    0.456
AGB30091.1
TIGR00268 family protein; PFAM: Asparagine synthase; TIGRFAM: TIGR00268 family protein.
   
    0.454
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.