STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB31301.1PFAM: Aminotransferase class I and II. (366 aa)    
Predicted Functional Partners:
AGB32843.1
PFAM: Aminotransferase class I and II.
  
  
 
0.915
AGB31930.1
PFAM: Aminotransferase class I and II.
  
  
 
0.914
AGB30135.1
PFAM: Prephenate dehydratase; ACT domain.
     
  0.900
AGB32812.1
PFAM: Prephenate dehydrogenase.
     
  0.900
hisC
PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase.
  
  
 
0.828
AGB32163.1
PFAM: chorismate binding enzyme; TIGRFAM: isochorismate synthases.
     
  0.800
katG
Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
     
  0.800
mfnA
Tyrosine decarboxylase MnfA; Catalyzes the decarboxylation of L-aspartate to produce beta- alanine; Belongs to the group II decarboxylase family. MfnA subfamily.
     
  0.800
AGB31302.1
PFAM: Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA C-terminal domain.
       0.727
AGB31300.1
Glycosyl transferase.
       0.568
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.