STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB31398.1PFAM: Sugar-specific transcriptional regulator TrmB. (250 aa)    
Predicted Functional Partners:
AGB31399.1
Putative RND superfamily exporter; PFAM: MMPL family; TIGRFAM: The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family.
 
     0.823
AGB32094.1
PFAM: Sugar-specific transcriptional regulator TrmB; Archaeal transcriptional regulator TrmB.
  
   
 0.653
AGB31400.1
Metal-dependent hydrolase, beta-lactamase superfamily III.
 
    0.648
AGB31319.1
Putative RNA-binding protein; PFAM: Protein of unknown function, DUF655.
  
     0.470
AGB31864.1
Fe-S-cluster-containing hydrogenase subunit; Manually curated.
   
    0.459
AGB32199.1
Fe-S-cluster-containing hydrogenase subunit.
   
    0.459
AGB32733.1
Putative RND superfamily exporter; PFAM: MMPL family; TIGRFAM: The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family.
 
     0.436
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.