STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB31441.14-hydroxybenzoate polyprenyltransferase-like prenyltransferase; PFAM: UbiA prenyltransferase family. (271 aa)    
Predicted Functional Partners:
AGB31191.1
Hypothetical protein.
  
     0.635
AGB32437.1
Hypothetical protein.
 
   
 0.635
fni
Isopentenyl-diphosphate delta-isomerase, type 2; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
    
 0.621
AGB30873.1
CARDB domain-containing protein; PFAM: CARDB.
  
     0.618
AGB32498.1
Hypothetical protein.
  
     0.598
AGB30732.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
     0.592
AGB30544.1
ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing; PFAM: UvrD/REP helicase.
 
   
 0.570
AGB29965.1
Signal transduction histidine kinase; PFAM: GAF domain; PAS fold.
  
   
 0.563
AGB33471.1
Hypothetical protein; PFAM: Glutamate-cysteine ligase family 2(GCS2).
 
     0.547
AGB30024.1
PFAM: Heme NO binding.
 
  
 0.534
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.