STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB31474.1Putative metal-dependent hydrolase (urease superfamily); PFAM: TatD related DNase. (280 aa)    
Predicted Functional Partners:
AGB31475.1
PFAM: Uncharacterized protein conserved in archaea (DUF2150).
 
     0.888
AGB33532.1
NMD protein affecting ribosome stability and mRNA decay; PFAM: NMD3 family.
 
     0.734
rpl40e
PFAM: Ribosomal L40e family; Belongs to the eukaryotic ribosomal protein eL40 family.
  
     0.730
AGB31471.1
PFAM: Protein of unknown function DUF88; TIGRFAM: TIGR00288 family protein.
 
     0.708
rpl44e
Ribosomal protein L44E; Binds to the 23S rRNA.
 
     0.699
AGB32369.1
PFAM: Uncharacterised protein family (UPF0179); Belongs to the UPF0179 family.
  
     0.697
AGB32938.1
TIGRFAM: TIGR01210 family protein.
  
     0.689
AGB32943.1
PFAM: PUA domain; Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; uncharacterized domain 2.
  
     0.667
AGB33402.1
Putative Zn-finger protein.
  
     0.667
AGB31032.1
Single-stranded DNA-binding protein.
  
     0.661
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.