STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB31595.1PFAM: Protein of unknown function (DUF456). (161 aa)    
Predicted Functional Partners:
AGB31594.1
Hypothetical protein.
       0.876
AGB31596.1
Short-chain dehydrogenase of unknown substrate specificity; PFAM: short chain dehydrogenase.
       0.647
AGB32792.1
Putative membrane protein; PFAM: GtrA-like protein.
  
     0.581
AGB32347.1
Hypothetical protein.
  
     0.570
AGB30900.1
Putative ring-cleavage extradiol dioxygenase.
  
     0.521
AGB33471.1
Hypothetical protein; PFAM: Glutamate-cysteine ligase family 2(GCS2).
  
     0.497
AGB30937.1
Hypothetical protein.
  
     0.492
AGB32195.1
PFAM: Uncharacterized conserved protein (DUF2249).
  
     0.462
AGB31004.1
Hypothetical protein; PFAM: Adenosylcobinamide amidohydrolase.
  
     0.447
AGB31010.1
Putative HAD superfamily hydrolase; PFAM: haloacid dehalogenase-like hydrolase.
  
     0.437
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.