STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB31693.1Transposase; Manually curated. (328 aa)    
Predicted Functional Partners:
hemD
PFAM: Uroporphyrinogen-III synthase HemD.
       0.615
AGB31632.1
Transposase family protein; PFAM: Transposase DDE domain.
 
     0.478
AGB30211.1
Transposase family protein; PFAM: Transposase DDE domain.
 
     0.474
AGB31490.1
Transposase family protein; PFAM: Transposase DDE domain.
 
     0.474
AGB32108.1
Transposase family protein; PFAM: Transposase DDE domain.
 
     0.474
AGB32687.1
Transposase family protein; PFAM: Transposase DDE domain.
 
     0.474
AGB31691.1
PFAM: Deoxyhypusine synthase; TIGRFAM: deoxyhypusine synthase.
       0.445
AGB29995.1
Transposase.
 
   
 0.433
AGB31694.1
Hypothetical protein.
       0.424
AGB31695.1
Hypothetical protein.
       0.424
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.