STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB31747.1Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily. (419 aa)    
Predicted Functional Partners:
AGB32717.1
3-polyprenyl-4-hydroxybenzoate decarboxylase-like protein; PFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: UbiD family decarboxylases.
  
     0.646
AGB30168.1
Hypothetical protein; PFAM: SWIM zinc finger.
  
    0.576
AGB31748.1
PAS domain S-box; PFAM: HTH DNA binding domain; Response regulator receiver domain; PAS fold; TIGRFAM: PAS domain S-box.
 
    0.559
AGB30228.1
Transposase family protein; PFAM: Transposase DDE domain; manually curated.
  
     0.532
AGB30261.1
Transposase family protein; PFAM: Transposase DDE domain; manually curated.
  
     0.532
AGB30435.1
Transposase family protein; PFAM: Transposase DDE domain; manually curated.
  
     0.532
AGB30552.1
Transposase family protein; PFAM: Transposase DDE domain; manually curated.
  
     0.532
AGB32357.1
Transposase family protein; PFAM: Transposase DDE domain; manually curated.
  
     0.532
AGB31808.1
PFAM: Sugar-specific transcriptional regulator TrmB.
  
     0.509
AGB30840.1
PFAM: HTH DNA binding domain.
  
     0.493
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.