STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB31876.1PFAM: Protein of unknown function DUF82. (154 aa)    
Predicted Functional Partners:
AGB31874.1
Hypothetical protein.
       0.932
AGB31875.1
DNA polymerase IV (family X); PFAM: PHP domain.
       0.932
AGB31877.1
DNA-directed RNA polymerase, subunit M/transcription elongation factor TFIIS; PFAM: RNA polymerases M/15 Kd subunit.
       0.505
AGB31873.1
Hypothetical protein.
       0.463
AGB31072.1
Hypothetical protein.
  
     0.459
AGB33217.1
PFAM: AMMECR1; TIGRFAM: uncharacterized protein, PH0010 family.
 
     0.447
nfi
Deoxyinosine 3'endonuclease (endonuclease V); DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA.
 
     0.446
AGB31872.1
Putative membrane protein; PFAM: Rhomboid family; AN1-like Zinc finger.
       0.421
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.