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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB32013.1Hypothetical protein. (329 aa)    
Predicted Functional Partners:
AGB31334.1
Kef-type K+ transport system, membrane component; PFAM: Sodium/hydrogen exchanger family.
   
    0.810
AGB32518.1
PFAM: Magnesium chelatase, subunit ChlI; von Willebrand factor type A domain.
 
     0.771
AGB32784.1
Putative membrane protein; PFAM: Transmembrane exosortase (Exosortase_EpsH); TIGRFAM: exosortase/archaeosortase family protein; archaeosortase A, PGF-CTERM-specific.
  
    0.674
bioB
Biotin synthase-like enzyme; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
   
    0.657
AGB31849.1
Hypothetical protein.
   
    0.647
AGB30073.1
Putative metal-dependent membrane protease; PFAM: CAAX amino terminal protease family.
   
    0.622
AGB31307.1
PFAM: CAAX amino terminal protease family.
   
    0.622
AGB33121.1
Putative metal-dependent membrane protease; PFAM: CAAX amino terminal protease family.
   
    0.622
AGB31004.1
Hypothetical protein; PFAM: Adenosylcobinamide amidohydrolase.
 
     0.597
AGB32012.1
Putative flavoprotein; PFAM: NADPH-dependent FMN reductase.
       0.556
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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