Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB32031.1PFAM: MatE; TIGRFAM: putative efflux protein, MATE family. (494 aa)    
Predicted Functional Partners:
AGB32032.1
PFAM: Bacterial regulatory proteins, tetR family.
     
 0.795
gap
Glyceraldehyde-3-phosphate dehydrogenase, type II; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type II.
 
  
 0.621
AGB32030.1
Kef-type K+ transport system, membrane component; PFAM: Sodium/hydrogen exchanger family.
  
  
 0.561
AGB30540.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter.
  
  
 0.550
AGB30620.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter.
  
  
 0.550
AGB30988.1
Phytoene/squalene synthetase; PFAM: Squalene/phytoene synthase.
   
  
 0.517
AGB32657.1
Phytoene/squalene synthetase; PFAM: Squalene/phytoene synthase.
   
  
 0.517
AGB32033.1
Putative exosome subunit; PFAM: Protein of unknown function DUF54.
       0.514
tbp
TATA-box binding protein (TBP), component of TFIID and TFIIIB; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.
   
    0.510
tbp-2
TATA-box binding protein (TBP), component of TFIID and TFIIIB; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.
   
    0.510
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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