STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGB32058.1Plastocyanin; PFAM: Copper binding proteins, plastocyanin/azurin family; TIGRFAM: plastocyanin. (817 aa)    
Predicted Functional Partners:
AGB32915.1
Transcriptional regulator; PFAM: AsnC family.
 
     0.663
AGB32886.1
Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily.
 
     0.598
AGB31428.1
PFAM: Glucose / Sorbosone dehydrogenase; Copper binding proteins, plastocyanin/azurin family.
   
 
 0.591
AGB33425.1
ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein.
  
     0.591
AGB31698.1
Transposase.
  
     0.590
AGB31662.1
PFAM: HTH DNA binding domain; GAF domain.
  
     0.561
AGB30577.1
Hypothetical protein; PFAM: YqcI/YcgG family.
  
     0.545
AGB30671.1
ABC-type Fe3+ transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein.
  
    0.542
cofD
LPPG:FO 2-phospho-L-lactate transferase; Catalyzes the transfer of the phosphoenolpyruvate moiety from enoylpyruvoyl-2-diphospho-5'-guanosine (EPPG) to 7,8-didemethyl-8- hydroxy-5-deazariboflavin (FO) with the formation of dehydro coenzyme F420-0 and GMP.
       0.539
AGB32060.1
TIGRFAM: TIM-barrel protein, putative.
       0.539
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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