STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB32094.1PFAM: Sugar-specific transcriptional regulator TrmB; Archaeal transcriptional regulator TrmB. (354 aa)    
Predicted Functional Partners:
AGB32093.1
PFAM: Mechanosensitive ion channel.
       0.720
AGB33214.1
Histones H3 and H4; PFAM: Histone-like transcription factor (CBF/NF-Y) and archaeal histone.
  
   
 0.666
AGB31398.1
PFAM: Sugar-specific transcriptional regulator TrmB.
  
   
 0.653
AGB29983.1
Peroxiredoxin; PFAM: AhpC/TSA family.
 
     0.636
AGB31808.1
PFAM: Sugar-specific transcriptional regulator TrmB.
  
   
 0.634
AGB30323.1
SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase; PFAM: TRAM domain.
  
     0.566
AGB30498.1
Putative phosphatase.
 
     0.563
AGB31535.1
PFAM: Transcriptional regulator PadR-like family.
      
 0.563
AGB33543.1
NADH:ubiquinone oxidoreductase chain I-like protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
  
   
 0.540
AGB33534.1
DNA helicase, Rad3; PFAM: DEAD_2.
  
   
 0.530
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.