STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGB32117.1ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein; TIGRFAM: PGF-CTERM archaeal protein-sorting signal. (371 aa)    
Predicted Functional Partners:
AGB32115.1
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component; PFAM: ABC transporter.
 
 
 0.990
AGB32116.1
ABC-type Fe3+-siderophore transport system, permease component; PFAM: FecCD transport family.
 
 
 0.984
AGB33424.1
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component; PFAM: ABC transporter.
 
 
 0.922
AGB33423.1
ABC-type Fe3+-siderophore transport system, permease component; PFAM: FecCD transport family.
 
 
 0.900
AGB32518.1
PFAM: Magnesium chelatase, subunit ChlI; von Willebrand factor type A domain.
       0.761
srp19
Signal recognition particle 19 kDa protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.
       0.751
AGB32119.1
RNA-binding protein involved in rRNA processing.
       0.749
AGB32120.1
PFAM: Protein of unknown function (DUF1119).
 
     0.685
AGB32491.1
Molybdenum-binding protein; PFAM: TOBE domain; Bacterial regulatory helix-turn-helix protein, lysR family; TIGRFAM: molybdenum-pterin binding domain; ModE molybdate transport repressor domain.
       0.558
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
  
  
 0.536
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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