Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGB32198.1PFAM: HTH DNA binding domain. (224 aa)    
Predicted Functional Partners:
AGB33352.1
PFAM: HTH DNA binding domain.
  
     0.715
AGB30489.1
PFAM: HTH DNA binding domain.
  
     0.704
AGB31542.1
PFAM: HTH DNA binding domain.
  
     0.685
AGB32197.1
PFAM: Uncharacterized conserved protein (DUF2249).
 
     0.676
AGB30650.1
PFAM: HTH DNA binding domain.
  
     0.638
AGB30595.1
PFAM: HTH DNA binding domain.
  
     0.604
AGB32547.1
PFAM: Protein of unknown function (DUF2797).
  
     0.601
AGB33259.1
Hypothetical protein; PFAM: Domain of unknown function (DUF1508).
  
     0.580
AGB30719.1
PFAM: HTH DNA binding domain.
  
     0.554
AGB32826.1
Putative membrane protein; PFAM: Protein of unknown function (DUF1616).
  
     0.548
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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