STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB32199.1Fe-S-cluster-containing hydrogenase subunit. (554 aa)    
Predicted Functional Partners:
AGB32200.1
PFAM: Polysulphide reductase, NrfD.
 
 
 0.991
AGB33389.1
Nitrate reductase alpha subunit; PFAM: Molybdopterin oxidoreductase.
 
 
 0.984
AGB30103.1
PFAM: Polysulphide reductase, NrfD.
 
 
 0.964
AGB30087.1
Anaerobic dehydrogenase, typically selenocysteine-containing; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; manually curated.
 
 
 0.951
AGB32701.1
Formate dehydrogenase, alpha subunit, archaeal-type; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; TIGRFAM: formate dehydrogenase, alpha subunit, archaeal-type.
 
 
 0.890
AGB32201.1
Hypothetical protein.
       0.873
AGB31944.1
PFAM: Aldehyde ferredoxin oxidoreductase, N-terminal domain; Aldehyde ferredoxin oxidoreductase, domains 2 & 3.
 
 
 0.685
AGB33364.1
PFAM: Aldehyde ferredoxin oxidoreductase, N-terminal domain; Aldehyde ferredoxin oxidoreductase, domains 2 & 3.
 
 
 0.683
AGB33391.1
Putative component of anaerobic dehydrogenase; PFAM: Nitrate reductase delta subunit; TIGRFAM: DMSO reductase family type II enzyme chaperone.
 
   
 0.651
AGB32273.1
Putative component of anaerobic dehydrogenase; PFAM: Nitrate reductase delta subunit.
 
   
 0.644
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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