STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB32350.1PFAM: Radical SAM superfamily; TIGRFAM: putative heme d1 biosynthesis radical SAM protein NirJ1; radical SAM additional 4Fe4S-binding domain. (407 aa)    
Predicted Functional Partners:
AGB32352.1
PFAM: Radical SAM superfamily; TIGRFAM: radical SAM protein, BA_1875 family; radical SAM additional 4Fe4S-binding domain.
 
  
 
0.957
AGB32270.1
PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain.
  
  
 
0.905
AGB32351.1
PFAM: Phenylacetic acid degradation B; TIGRFAM: rSAM-partnered protein, Htur_1727 family.
     
 0.798
AGB33305.1
Hypothetical protein.
  
 0.793
AGB30503.1
Transcriptional regulator.
  
 0.790
AGB33546.1
Ammonia permease; PFAM: Ammonium Transporter Family; Nitrogen regulatory protein P-II; TIGRFAM: ammonium transporter; Belongs to the P(II) protein family.
  
  
 0.767
AGB32267.1
Heme/copper-type cytochrome/quinol oxidase, subunit 2; PFAM: TAT (twin-arginine translocation) pathway signal sequence; Cytochrome C oxidase subunit II, periplasmic domain; Cytochrome D1 heme domain.
 
  
 0.678
AGB31857.1
PFAM: Cytochrome D1 heme domain.
  
     0.659
AGB31048.1
Flavin-dependent dehydrogenase; PFAM: FAD binding domain.
 
  
 0.568
AGB33550.1
Nitric oxide reductase large subunit; PFAM: Cytochrome C and Quinol oxidase polypeptide I.
 
  
 0.545
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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