STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB32532.1Hypothetical protein. (210 aa)    
Predicted Functional Partners:
AGB32533.1
Putative CoA-binding protein; PFAM: CoA binding domain.
       0.720
ubiA
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.
       0.646
AGB33123.1
Hypothetical protein; PFAM: PRC-barrel domain.
  
     0.641
AGB30149.1
Hypothetical protein.
  
     0.624
AGB30315.1
Hypothetical protein.
  
     0.610
AGB31896.1
RecA-superfamily ATPase possibly involved in signal transduction.
 
     0.591
AGB32557.1
Hypothetical protein.
  
     0.589
AGB33637.1
PFAM: Zn-ribbon containing protein (DUF2072).
  
     0.576
AGB32897.1
Putative ATPase.
  
     0.570
AGB30513.1
Putative transcriptional regulator.
  
     0.563
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.