STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB32562.1ATPase, type IV secretory pathway VirB11 component like protein; PFAM: Type II/IV secretion system protein. (618 aa)    
Predicted Functional Partners:
AGB32563.1
Archaeal flagella assembly protein J; PFAM: Bacterial type II secretion system protein F domain.
 
  
 0.980
AGB32753.1
Archaeal flagella assembly protein J; PFAM: Bacterial type II secretion system protein F domain.
 
  
 0.752
AGB32456.1
Archaeal flagella assembly protein J; PFAM: Bacterial type II secretion system protein F domain.
 
  
 0.680
AGB32561.1
Hypothetical protein.
       0.621
AGB30277.1
ATPase (PilT family); PFAM: KH domain; Type II/IV secretion system protein; PIN domain.
  
   
 0.600
trmY
Hypothetical protein; Specifically catalyzes the N1-methylation of pseudouridine at position 54 (Psi54) in tRNAs; Belongs to the methyltransferase superfamily. TrmY family.
  
    0.532
AGB30676.1
Cell division ATPase MinD, archaeal; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: cell division ATPase MinD, archaeal.
 
  
 0.477
AGB32469.1
PFAM: Response regulator receiver domain.
 
  
 0.474
AGB31319.1
Putative RNA-binding protein; PFAM: Protein of unknown function, DUF655.
  
     0.471
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome.
 
   
 0.467
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.