STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB32571.1PFAM: PBS lyase HEAT-like repeat. (447 aa)    
Predicted Functional Partners:
AGB32570.1
Phosphatidylserine synthase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.920
eif5a
Translation initiation factor eIF-5A; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family.
  
 0.802
AGB32569.1
Plastocyanin; PFAM: Copper binding proteins, plastocyanin/azurin family.
 
     0.744
AGB33534.1
DNA helicase, Rad3; PFAM: DEAD_2.
  
    0.669
AGB33532.1
NMD protein affecting ribosome stability and mRNA decay; PFAM: NMD3 family.
  
    0.666
AGB33113.1
PFAM: Acetyltransferase (GNAT) family.
  
     0.654
AGB30462.1
Putative DHD superfamily phosphohydrolase.
  
     0.651
AGB32572.1
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; PFAM: Phospholipase D Active site motif.
       0.626
AGB31988.1
PFAM: Cytochrome oxidase assembly protein.
  
    0.617
AGB32813.1
Methyltransferase family protein; PFAM: Methyltransferase domain.
  
     0.608
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.