STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB32736.1Putative membrane protein; PFAM: DoxX. (191 aa)    
Predicted Functional Partners:
AGB33485.1
Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain.
  
 
 0.915
AGB33486.1
Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain.
  
 
 0.915
AGB33459.1
Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain.
    
 0.904
AGB33639.1
PFAM: GTPase of unknown function; TIGRFAM: small GTP-binding protein domain; IMG reference gene:2509882500_SP.
  
 0.761
AGB31748.1
PAS domain S-box; PFAM: HTH DNA binding domain; Response regulator receiver domain; PAS fold; TIGRFAM: PAS domain S-box.
  
     0.598
AGB33403.1
Hypothetical protein.
  
     0.596
AGB32735.1
Sugar phosphate permease; PFAM: Major Facilitator Superfamily.
   
   0.557
AGB33074.1
Sugar kinase, ribokinase; PFAM: pfkB family carbohydrate kinase.
  
  
 0.534
AGB31838.1
Hypothetical protein.
  
     0.529
AGB32302.1
PFAM: Thioredoxin.
 
 
 0.524
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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