STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB32753.1Archaeal flagella assembly protein J; PFAM: Bacterial type II secretion system protein F domain. (761 aa)    
Predicted Functional Partners:
AGB32752.1
ATPase, type IV secretory pathway VirB11 component like protein; PFAM: Type II/IV secretion system protein.
 
  
 0.945
AGB32754.1
Archaeal flagellin-like protein; TIGRFAM: archaeal flagellin N-terminal-like domain.
       0.789
AGB32455.1
ATPase, type IV secretory pathway VirB11 component like protein; PFAM: Type II/IV secretion system protein.
 
  
 0.752
AGB32562.1
ATPase, type IV secretory pathway VirB11 component like protein; PFAM: Type II/IV secretion system protein.
 
  
 0.752
AGB33123.1
Hypothetical protein; PFAM: PRC-barrel domain.
  
    0.742
AGB30826.1
PFAM: Protein of unknown function (DUF1628); TIGRFAM: archaeal flagellin N-terminal-like domain.
 
   
 0.730
AGB32261.1
Hypothetical protein; PFAM: PRC-barrel domain.
  
    0.701
AGB30647.1
PFAM: Protein of unknown function (DUF552).
  
     0.692
AGB33637.1
PFAM: Zn-ribbon containing protein (DUF2072).
  
     0.665
AGB33638.1
PFAM: Uncharacterized protein conserved in archaea (DUF2073).
  
     0.660
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.