STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB32781.1Phytoene dehydrogenase-like oxidoreductase; PFAM: Flavin containing amine oxidoreductase. (432 aa)    
Predicted Functional Partners:
AGB30988.1
Phytoene/squalene synthetase; PFAM: Squalene/phytoene synthase.
 
  
 0.824
AGB32811.1
Putative NAD/FAD-dependent oxidoreductase; PFAM: Flavin containing amine oxidoreductase.
 
   
 0.648
AGB32657.1
Phytoene/squalene synthetase; PFAM: Squalene/phytoene synthase.
 
  
 0.616
AGB32518.1
PFAM: Magnesium chelatase, subunit ChlI; von Willebrand factor type A domain.
 
  
 0.603
AGB32780.1
Hypothetical protein.
       0.548
AGB30858.1
Threonine synthase; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase.
  
  
 0.508
AGB32517.1
PFAM: CobN/Magnesium Chelatase; TIGRFAM: cobaltochelatase, CobN subunit.
 
  
 0.486
AGB32782.1
Hypothetical protein.
       0.474
ubiA
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.
 
  
 0.466
AGB30991.1
PFAM: Protein of unknown function (DUF422); TIGRFAM: carotene biosynthesis associated membrane protein.
 
   
 0.461
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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