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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB32822.1PFAM: Protein of unknown function (DUF354). (357 aa)    
Predicted Functional Partners:
AGB32823.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
 
     0.896
AGB32824.1
Hypothetical protein.
       0.786
AGB31208.1
Hypothetical protein.
 
     0.578
AGB32821.1
Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
     
 0.571
AGB31180.1
PFAM: FemAB family.
 
     0.534
AGB31217.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
 
     0.531
AGB31193.1
Putative methicillin resistance protein; PFAM: FemAB family.
 
     0.494
AGB31220.1
PFAM: Glycosyl transferase family 2.
 
  
 0.472
AGB32834.1
PFAM: Glycosyl transferase family 2.
 
  
 0.452
AGB31226.1
Putative membrane protein; PFAM: Protein of unknown function (DUF1616).
 
     0.443
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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