STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGB32830.1Putative xylanase/chitin deacetylase; PFAM: Polysaccharide deacetylase. (442 aa)    
Predicted Functional Partners:
AGB32829.1
PFAM: Asparagine synthase.
 
     0.868
AGB30873.1
CARDB domain-containing protein; PFAM: CARDB.
  
     0.744
AGB32437.1
Hypothetical protein.
  
     0.717
AGB31213.1
PFAM: Polysaccharide deacetylase.
  
     0.713
AGB32835.1
Membrane protein involved in the export of O-antigen and teichoic acid; PFAM: Polysaccharide biosynthesis protein.
  
     0.695
AGB33596.1
Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain.
  
     0.662
AGB31257.1
Site-specific recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain.
  
     0.656
AGB31158.1
PAS domain S-box; PFAM: HTH DNA binding domain; GAF domain; PAS fold; TIGRFAM: PAS domain S-box.
  
     0.632
AGB31191.1
Hypothetical protein.
  
     0.599
AGB32831.1
Putative deacylase; PFAM: Succinylglutamate desuccinylase / Aspartoacylase family; PKD domain.
  
     0.585
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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