STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB32912.1Transposase. (370 aa)    
Predicted Functional Partners:
AGB31796.1
PFAM: HTH DNA binding domain.
  
     0.713
AGB30900.1
Putative ring-cleavage extradiol dioxygenase.
  
     0.696
AGB31713.1
Transposase family protein; PFAM: Transposase DDE domain.
  
     0.623
AGB32717.1
3-polyprenyl-4-hydroxybenzoate decarboxylase-like protein; PFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: UbiD family decarboxylases.
  
     0.600
AGB32303.1
Hypothetical protein.
  
     0.587
AGB30211.1
Transposase family protein; PFAM: Transposase DDE domain.
 
     0.557
AGB31490.1
Transposase family protein; PFAM: Transposase DDE domain.
 
     0.557
AGB32108.1
Transposase family protein; PFAM: Transposase DDE domain.
 
     0.557
AGB32687.1
Transposase family protein; PFAM: Transposase DDE domain.
 
     0.557
AGB31451.1
Hypothetical protein.
  
     0.556
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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