STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB32943.1PFAM: PUA domain; Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; uncharacterized domain 2. (583 aa)    
Predicted Functional Partners:
tgtA
tRNA-guanine transglycosylase, archaeosine-15-forming; Exchanges the guanine residue with 7-cyano-7-deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D-loop) of archaeal tRNAs; Belongs to the archaeosine tRNA-ribosyltransferase family.
 
 
0.822
AGB33067.1
Putative coiled-coil protein.
 
   
 0.822
AGB32938.1
TIGRFAM: TIGR01210 family protein.
 
     0.785
AGB31277.1
Putative transcriptional regulator; PFAM: Helix-turn-helix.
  
     0.720
AGB33532.1
NMD protein affecting ribosome stability and mRNA decay; PFAM: NMD3 family.
  
     0.715
AGB30759.1
PFAM: Uncharacterized protein conserved in archaea (DUF2240).
  
     0.709
AGB30319.1
Putative membrane protein; PFAM: Domain of unknown function (DUF373).
  
   
 0.707
AGB31032.1
Single-stranded DNA-binding protein.
  
     0.707
AGB33402.1
Putative Zn-finger protein.
  
     0.700
AGB32369.1
PFAM: Uncharacterised protein family (UPF0179); Belongs to the UPF0179 family.
  
     0.697
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.