STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB32963.1PFAM: HTH DNA binding domain. (219 aa)    
Predicted Functional Partners:
AGB32557.1
Hypothetical protein.
  
     0.692
AGB32281.1
PFAM: HTH DNA binding domain.
  
     0.652
AGB32897.1
Putative ATPase.
  
     0.629
AGB33230.1
Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily.
  
     0.624
AGB33101.1
PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.
  
     0.606
AGB30707.1
PRPP-binding protein, adenine/guanine phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain.
  
    0.585
AGB30489.1
PFAM: HTH DNA binding domain.
  
     0.584
AGB30595.1
PFAM: HTH DNA binding domain.
  
     0.562
AGB32964.1
IclR-like transcriptional regulator.
       0.560
AGB30513.1
Putative transcriptional regulator.
  
     0.559
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.