STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB33063.1PFAM: Peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type. (330 aa)    
Predicted Functional Partners:
AGB33062.1
Putative membrane protein; PFAM: Domain of unknown function (DUF373).
       0.716
AGB30369.1
Putative membrane-associated Zn-dependent protease; PFAM: Peptidase family M50; PDZ domain (Also known as DHR or GLGF).
     
 0.661
secD
Preprotein translocase subunit SecD; Involved in protein export.
 
   
 0.641
AGB33061.1
PFAM: ATP-binding region; TIGRFAM: MJ0570-related uncharacterized domain; TIGR00289 family protein; arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein.
       0.547
AGB31872.1
Putative membrane protein; PFAM: Rhomboid family; AN1-like Zinc finger.
  
  
 0.532
AGB32061.1
Cupin domain-containing protein; PFAM: Cupin domain.
      
 0.519
AGB33064.1
Hypothetical protein.
       0.480
AGB30297.1
Hypothetical protein; PFAM: Bacterial membrane flanked domain.
  
    0.479
AGB32129.1
Hypothetical protein; PFAM: Bacterial membrane flanked domain.
  
    0.479
AGB32136.1
Hypothetical protein; PFAM: Bacterial membrane flanked domain.
  
    0.479
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.