STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB33305.1Hypothetical protein. (346 aa)    
Predicted Functional Partners:
AGB32350.1
PFAM: Radical SAM superfamily; TIGRFAM: putative heme d1 biosynthesis radical SAM protein NirJ1; radical SAM additional 4Fe4S-binding domain.
 
 0.978
AGB32270.1
PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain.
 
 0.977
AGB30503.1
Transcriptional regulator.
 
  
 
0.913
AGB33306.1
Anthranilate phosphoribosyltransferase; PFAM: Glycosyl transferase family, a/b domain; Glycosyl transferase family, helical bundle domain; TIGRFAM: anthranilate phosphoribosyltransferase.
 
     0.797
AGB31857.1
PFAM: Cytochrome D1 heme domain.
  
     0.711
AGB32267.1
Heme/copper-type cytochrome/quinol oxidase, subunit 2; PFAM: TAT (twin-arginine translocation) pathway signal sequence; Cytochrome C oxidase subunit II, periplasmic domain; Cytochrome D1 heme domain.
  
     0.711
AGB32352.1
PFAM: Radical SAM superfamily; TIGRFAM: radical SAM protein, BA_1875 family; radical SAM additional 4Fe4S-binding domain.
  
 0.662
AGB30502.1
TIGRFAM: siroheme synthase, N-terminal domain.
 
   
 0.527
AGB33304.1
Hypothetical protein.
       0.527
AGB33610.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
    0.511
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.