STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGB33342.1Putative deacylase; PFAM: Succinylglutamate desuccinylase / Aspartoacylase family. (323 aa)    
Predicted Functional Partners:
AGB33345.1
PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD.
       0.740
AGB33407.1
Glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase); PFAM: RimK-like ATP-grasp domain; TIGRFAM: alpha-L-glutamate ligases, RimK family.
 
     0.651
AGB32831.1
Putative deacylase; PFAM: Succinylglutamate desuccinylase / Aspartoacylase family; PKD domain.
  
     0.645
AGB32439.1
alpha-L-glutamate ligase, RimK family; PFAM: Protein of unknown function (DUF785); RimK-like ATP-grasp domain; TIGRFAM: alpha-L-glutamate ligases, RimK family.
 
     0.598
AGB33343.1
Hypothetical protein.
       0.566
AGB33344.1
Hypothetical protein.
       0.566
AGB33450.1
PFAM: RimK-like ATP-grasp domain; TIGRFAM: Lysine biosynthesis enzyme LysX; alpha-L-glutamate ligases, RimK family.
 
     0.427
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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