STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB33352.1PFAM: HTH DNA binding domain. (242 aa)    
Predicted Functional Partners:
AGB31494.1
PFAM: HTH DNA binding domain.
  
     0.729
AGB32198.1
PFAM: HTH DNA binding domain.
  
     0.715
AGB30719.1
PFAM: HTH DNA binding domain.
  
     0.667
AGB31796.1
PFAM: HTH DNA binding domain.
  
     0.667
AGB33442.1
PFAM: Sugar-specific transcriptional regulator TrmB.
  
     0.659
AGB30840.1
PFAM: HTH DNA binding domain.
  
     0.593
AGB32372.1
PFAM: Polyketide cyclase / dehydrase and lipid transport.
  
     0.575
AGB31825.1
PFAM: Bacterial regulatory protein, arsR family.
  
     0.570
AGB33351.1
PFAM: Proline dehydrogenase.
       0.569
AGB30975.1
Hypothetical protein.
  
     0.556
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.