STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB33418.1Transcriptional regulator; PFAM: HTH domain. (153 aa)    
Predicted Functional Partners:
AGB30063.1
Transcriptional regulator.
  
     0.684
AGB31425.1
PFAM: Bacterial regulatory protein, arsR family; AsnC family.
  
     0.644
AGB30356.1
PFAM: Bacterial regulatory protein, arsR family; AsnC family.
  
     0.635
AGB33419.1
Hypothetical protein.
       0.567
AGB31721.1
Transcriptional regulator; PFAM: AsnC family.
  
     0.536
AGB33416.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2309); Belongs to the UPF0753 family.
       0.491
AGB33417.1
NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit Na+/H+ antiporter, MnhA subunit; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus.
       0.491
AGB33420.1
PFAM: 'Cold-shock' DNA-binding domain.
  
    0.434
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.