STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB33475.1PFAM: Protein of unknown function DUF54; Belongs to the UPF0201 family. (137 aa)    
Predicted Functional Partners:
AGB33474.1
PFAM: Adenylate kinase.
    0.981
AGB32033.1
Putative exosome subunit; PFAM: Protein of unknown function DUF54.
  
   
 0.736
AGB30317.1
Hypothetical protein.
  
     0.670
AGB30866.1
PFAM: Protein of unknown function DUF137.
 
   
 0.625
AGB33532.1
NMD protein affecting ribosome stability and mRNA decay; PFAM: NMD3 family.
  
     0.574
AGB31032.1
Single-stranded DNA-binding protein.
  
     0.523
rpl40e
PFAM: Ribosomal L40e family; Belongs to the eukaryotic ribosomal protein eL40 family.
  
     0.502
AGB33442.1
PFAM: Sugar-specific transcriptional regulator TrmB.
  
     0.499
AGB31471.1
PFAM: Protein of unknown function DUF88; TIGRFAM: TIGR00288 family protein.
  
     0.493
AGB30373.1
Molybdopterin converting factor, large subunit; PFAM: MoaE protein.
  
    0.491
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.