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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ71395.1PFAM: HTH DNA binding domain. (216 aa)    
Predicted Functional Partners:
AFZ74328.1
PFAM: HTH DNA binding domain.
  
     0.621
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
       0.603
hutI
Imidazolonepropionase; PFAM: Amidohydrolase family; TIGRFAM: imidazolonepropionase; Belongs to the metallo-dependent hydrolases superfamily. HutI family.
       0.600
hutH
PFAM: Phenylalanine and histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase.
       0.575
hutG
Formimidoylglutamase; PFAM: Arginase family; TIGRFAM: formimidoylglutamase; Belongs to the arginase family.
       0.572
AFZ74174.1
PFAM: Sugar-specific transcriptional regulator TrmB.
  
     0.564
AFZ74344.1
PFAM: Acetyltransferase (GNAT) family.
  
     0.557
AFZ74189.1
PFAM: HTH DNA binding domain.
  
     0.497
AFZ74171.1
PFAM: Sugar-specific transcriptional regulator TrmB.
  
     0.492
AFZ74379.1
Hypothetical protein.
  
     0.469
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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