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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ71408.1PFAM: Integral membrane protein DUF106. (316 aa)    
Predicted Functional Partners:
AFZ73966.1
PFAM: PrkA AAA domain; PrkA serine protein kinase C-terminal domain.
  
    0.775
artA
Archaeosortase A, PGF-CTERM-specific; PFAM: Transmembrane exosortase (Exosortase_EpsH); TIGRFAM: exosortase/archaeosortase family protein; archaeosortase A, PGF-CTERM-specific.
  
     0.737
AFZ72802.1
PFAM: Zn-ribbon containing protein (DUF2072).
  
     0.692
AFZ73959.1
ABC-type Na+ efflux pump, permease component.
  
     0.682
AFZ71463.1
PFAM: Membrane protein of unknown function DUF63.
  
     0.681
AFZ74919.1
S-layer domain-containing protein; TIGRFAM: conserved repeat domain.
  
     0.675
AFZ72510.1
Single-stranded DNA-binding protein; PFAM: OB-fold nucleic acid binding domain.
  
     0.671
AFZ72438.1
Hypothetical protein; PFAM: TrkA-C domain; PhoU domain.
  
     0.663
cofC
2-phospho-L-lactate guanylyltransferase; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor; Belongs to the CofC family.
  
     0.660
AFZ73823.1
Phosphate uptake regulator; PFAM: PhoU domain; SpoVT / AbrB like domain.
  
     0.659
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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