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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ71462.1PFAM: Sugar-specific transcriptional regulator TrmB. (263 aa)    
Predicted Functional Partners:
AFZ71460.1
Putative RND superfamily exporter; PFAM: MMPL family.
       0.569
AFZ71461.1
S-layer domain-containing protein; PFAM: NPCBM-associated, NEW3 domain of alpha-galactosidase.
       0.568
AFZ73327.1
Putative RNA-binding protein; PFAM: Protein of unknown function, DUF655.
  
     0.567
AFZ74594.1
Cdc6-related protein, AAA superfamily ATPase; PFAM: ATPase family associated with various cellular activities (AAA).
  
     0.476
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome.
  
     0.468
AFZ71593.1
ATP-grasp superfamily enzyme; PFAM: PAC2 family; TIGRFAM: TIGR00161 family protein.
  
     0.444
polC
DNA polymerase type II, large subunit; Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase.
  
     0.415
AFZ71524.1
Fe-S-cluster-containing hydrogenase subunit.
   
    0.414
AFZ71662.1
Fe-S-cluster-containing hydrogenase subunit; PFAM: 4Fe-4S binding domain.
   
    0.414
AFZ71803.1
Fe-S-cluster-containing hydrogenase subunit; PFAM: 4Fe-4S binding domain.
   
    0.414
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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